Changes in version 1.0.1 (2025-08-29)                  

envi v1.0.1

  - Fixed Rd \link{} targets missing package in 'envi-package.Rd' and
    'lrren.Rd'
  - Updated vignette with updated package version and dependencies
  - as.im.SpatRaster() no longer in 'utils.R'; placed within vignette

envi v1.0.0

  - Fixed bug in lrren() to properly extract predicted RR values for
    cross validation after update using terra::extract()
  - Fixed NOTE in CRAN checks to provide package anchors for Rd \link{}
    targets not in the package itself and the base packages within
    'envi-package.Rd', 'lrren.Rd', and 'perlrren.Rd'
  - Fixed NOTE in Windows check to remove detritus files after testing
  - Renamed 'package.R' to 'envi-package.R' after Roxygen (>=7.3.0)
    update
  - Updated CITATION with peer-review publication

envi v0.1.19

  - Fixed 'Moved Permanently' content by replacing the old URL with the
    new URL

envi v0.1.18

  - Fixed bug in calculation of False Discovery Rate in internal
    pval_correct() function
  - Fixed test for plot_perturb() function that was presenting a warning
    by specifying cref0
  - Argument plot_cols correctly renamed cols in div_plot() and
    seq_plot() functions

envi v0.1.17

  - Fixed broken link in CITATION

envi v0.1.16

  - Migrated R-spatial dependencies
  - Replaced raster, rgeos, and sp packages in Imports with terra and sf
    because of imminent package retirements
  - Removed maptools from Suggests (replaced with new internal function
    as.im.SpatRaster())
  - Thank you, Roger Bivand, for the notice. Relates to ndi Issue #3
  - Note: raster is a dependency of RStoolbox (at present) which is used
    in the vignette
  - Updated test, examples, vignette, and documentation throughout
  - Added GitHub R-CMD-check
  - Updated citation style for CITATION file

envi v0.1.15

  - Uwe Ligges suggested (2022-08-26) that some parallel cluster is not
    cleanly closed in the tests
  - Added future::plan(future::multisession) in tests to remove the
    files in temp directory
  - Added links to sparr package in 'package.R'

envi v0.1.14

  - Updated package URL and BugReports to renamed GitHub account
    "lance-waller-lab" (previously "Waller-SUSAN")
  - Replaced methods::is() with inherits() and methods is no longer
    Imports
  - Added maptools and RStoolbox to Suggests (used in the package
    vignette)
  - Added CITATION file
  - Fixed typos in documentation throughout

envi v0.1.13

  - In the div_plot() and seq_plot() internal functions, replaced if
    (class(input) == "im") with if (methods::is(input, "im"))
  - Added methods package to Imports
  - Re-added utils package to Suggests because "zzz.R" calls the
    packageDescription() function
  - Moved spatstat.random package from Imports to Suggests because the
    rpoispp() function is only used for tests

envi v0.1.12

  - Fixed bug in perlrren() function that will now keep the predicted
    values even if NA
  - Fixed bug in plot_perturb() function that will now project rasters
    using method = "bilinear" for continuous values
  - Streamlined "test-perlrren.R" by removing duplicate tests for
    "incorrectly specified n_sim"
  - Fixed bug in "test-plot_cv.R" by resetting the graphics within an
    error check to clear a warning between tests

envi v0.1.11

  - Updated dependencies spatstat.core and spatstat.linnet packages
    based on feedback from the Spatstat Team (Adrian Baddeley and Ege
    Rubak). All random generators in spatstat.core were moved to a new
    package spatstat.random
      - spatstat.geom, spatstat.core, spatstat.linnet, and spatstat
        (>=2.0-0) are no longer Depends.
      - spatstat.geom and spatstat.random are now Imports
      - spatstat.data is now Suggests.
      - See the GitHub merge pull request.
  - maptools is no longer Imports
  - Fixed annotation typos in the perlrren(), pval_correct(), lrren()
    functions
  - Fixed bug in plot_cv() function that will specify the size of the
    confidence interval in the subtitle based on the chosen alpha level

envi v0.1.10

  - Addressed ERROR on R-devel CRAN environments by setting
    parallelly.makeNodePSOCK.setup_strategy = sequential for all CRAN
    tests as suggested by the maintainer for the future and parallelly
    packages who is actively working on a solution. See the GitHub
    issue.

envi v0.1.9

  - Removed LazyData: true from 'DESCRIPTION' file because the package
    has no data accessed via a data() command and has no data/ directory
    (in response to CRAN NOTE: 'LazyData' is specified without a 'data'
    directory)
  - Following advice from future package maintainer, now spatial_power()
    and jitter_power() functions reset future strategy when exiting
  - Addressed ERROR in MacOS environments on rhub by setting the
    parallelly.makeNodePSOCK.setup_strategy = sequential for MacOS
    environments running tcltk until parallelly (>=1.26.1-9002) is on
    CRAN. This workaround was suggested by the parallelly maintainer.
    See the GitHub issue.

envi v0.1.8

  - Updated spatstat package to new subsetted packages based on feedback
    from the Spatstat Team (Adrian Baddeley and Ege Rubak). Now
    spatstat.geom, spatstat.core, spatstat.linnet, and spatstat
    (>= 2.0-0) are in Depends
  - Replaced parallel and doParallel packages in Imports with doFuture,
    doRNG, and future packages to allow for parallel processing in
    lrren() and perlrren() functions to work across all CRAN
    environments
  - Removed utils package from Imports because the progress bar in
    lrren() and perlrren() functions is now produced with a helper
    function in utils.R that imports the iterators package
  - Set default for n_core argument in lrren() and perlrren() to be
    n_core = 2 to match documentation
  - Fixed bug in pval_correct() when p_correct = "FDR" that will return
    the minimum p-value instead of NULL if no p-value is less than the
    p-critical value
  - Updated cref0 and cref1 arguments in plot_predict() and
    plot_perturb() functions for PROJ6. Now calls sp::CRS() function
    within the raster::projectRaster() function and reformats the
    default argument values
  - Updated testthat checks for parallelization in lrren() and
    perlrren() functions and testthat checks for PROJ6 updates in
    plot_predict() and plot_perturb() functions

envi v0.1.7

  - Updated spatstat package to new subsetted packages based on feedback
    from the Spatstat Team (Adrian Baddeley and Ege Rubak).
    spatstat.geom and spatstat.core packages replace spatstat package in
    Imports
  - Added p_correct argument to lrren() and perlrren() which calls a
    new, internal function pval_correct() that calculates three types of
    corrections for multiple testing (FDR, Sidak, Bonferroni)
  - Removed a cv output for pval surface in lrren() that is not used in
    plot_cv()

envi v0.1.6

  - Updated URLs in envi-package.Rd

envi v0.1.5

  - Updated URLs in envi-package.Rd
  - Updated year in DESCRIPTION

envi v0.1.4

  - Fixed testthat preparation for plot_cv(), plot_obs(), and
    plot_predict() to remove "Warning message: In graphics::par(op):
    calling par(new=TRUE) with no plot"
  - Removed parallel tests in testthat for lrren() and perlrren() as
    there is a known error with makePSOCKcluster() in R version > 4.0.0
    (created error only in r-patched-solaris-x86 and
    r-release-macos-x86_64).